%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Do not modify this file since it was automatically generated from: % % jointUniquePairs.extensions.R % % by the Rdoc compiler part of the R.oo package. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \name{getMixture.JointUniquePairs} \alias{getMixture.JointUniquePairs} \alias{JointUniquePairs.getMixture} \alias{getMixture.JointUniquePairs} \alias{getMixture,JointUniquePairs-method} \title{Extract mixture model object from JointUniquePairs and Corr objects} \description{ Extract mixture model object from UniquePairsMatch and Corr objects. Computes mixture model on Corr object optionally subsetting the Corr object on a list of ID Maps from the JointUniquePairs object. } \usage{\method{getMixture}{JointUniquePairs}(this, corr, groups=NULL, full.group=FALSE, G=c(1:5), verbose=FALSE, ...)} \arguments{ \item{corr}{Corr object.} \item{groups}{Optional \code{\link[base]{list}} of DB names from the JointUniquePairs object defining the set of match groups to be used for retrieving the corresponding Mixture object.} \item{full.group}{ If@ TRUE, uses Corr subset to compute the mixture model or uses the original Corr otherwise. Default is \code{\link[base:logical]{FALSE}}.} \item{G}{ the number of mixture model components. If a numerical vector, the optimal mixture model is computed. Default is c(1:5).} \item{verbose}{if \code{\link[base:logical]{TRUE}} enables diagnostic messages. Default is \code{\link[base:logical]{FALSE}}.} \item{...}{Not used} } \value{ the Mixture object. } \examples{ # create and plot mixture (automatically determining the optimal number of components) #for a given DB subset treating the subset as a full group mixture.subset <- examples$jointUniquePairs$getMixture(examples$corr, groups=c("NetAffx_Q", "DAVID_Q", "EnVision_Q"), full.group=TRUE, G=c(1:5), verbose=TRUE); mixture.subset$plot(); } \seealso{For more information see \code{\link{JointUniquePairs}}.} \author{Alex Lisovich, Roger Day} \keyword{internal} \keyword{methods}