To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("maDB")
In most cases, you don't need to download the package archive at all.
maDB
|
This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see maDB.
Microarray database and utility functions for microarray data analysis.
Bioconductor version: 2.10
maDB allows to create a simple microarray database to store microarray experiments and annotation data into it. Affymetrix GeneChip expression values as well as values from two color microarrays can be stored into the database. Whole experiments or subsets from a experiment (or also values for a subset of genes in a subset of microarrays) can be fetched back to R. Additionally maDB provides different utility functions for the microarray data analysis like functions to draw MA plots or volcano plots with the data points color coded according to the local point density or functions that allow a replicate handling of miroarrays.
Author: Johannes Rainer <johannes.rainer at i-med.ac.at>
Maintainer: Johannes Rainer <johannes.rainer at i-med.ac.at>
Citation (from within R,
enter citation("maDB")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("maDB")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("maDB")
| maDB-015.pdf | ||
| maDB-016.pdf | ||
| maDB.pdf | ||
| Reference Manual |
Details
| biocViews | Microarray, OneChannel, Software, TwoChannel, Visualization |
| Version | 1.28.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 11 years) |
| License | LGPL (>= 2) |
| Depends | R (>= 2.6.0), Biobase(>= 2.5.5), affy(>= 1.23.4), pgUtils(>= 1.23.2), limma(>= 1.8.0), methods |
| Imports | |
| LinkingTo | |
| Suggests | annaffy(>= 1.6.2), biomaRt(>= 1.8.2), geneplotter |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | maDB_1.28.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/maDB/tree/release-2.10 |
| Package Short Url | http://bioconductor.org/packages/maDB/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
