To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HiTC")

In most cases, you don't need to download the package archive at all.

HiTC

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see HiTC.

High Throughput Chromosome Conformation Capture analysis

Bioconductor version: 2.10

The HiTC package was developed to explore high-throughput 'C' data such as 5C or Hi-C.

Author: Nicolas Servant

Maintainer: N. Servant <nicolas.servant at curie.fr>

Citation (from within R, enter citation("HiTC")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HiTC")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiTC")

PDF		Hight-Throughput Chromosome Conformation Capture analysis
PDF		Reference Manual
Text		NEWS

biocViews	HighThroughputSequencing, Sequencing, Software
Version	1.0.0
In Bioconductor since	BioC 2.10 (R-2.15) (4 years)
License	Artistic-2.0
Depends	R (>= 2.10.0), methods, girafe(>= 1.3.1), genomeIntervals(>= 1.7.1), RColorBrewer
Imports	methods, Biobase, Biostrings, graphics, grDevices, ShortRead
LinkingTo
Suggests
SystemRequirements
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URL
Depends On Me
Imports Me
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Build Report

Follow Installation instructions to use this package in your R session.

Package Source	HiTC_1.0.0.tar.gz
Windows Binary	HiTC_1.0.0.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/HiTC/tree/release-2.10
Package Short Url	http://bioconductor.org/packages/HiTC/
Package Downloads Report	Download Stats

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