To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GOSemSim")

In most cases, you don't need to download the package archive at all.

GOSemSim

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see GOSemSim.

GO-terms Semantic Similarity Measures

Bioconductor version: 2.10

Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for estimating GO semantic similarities. Support many species, including Anopheles, Arabidopsis, Bovine, Canine, Chicken, Chimp, Coelicolor, E coli strain K12 and Sakai, Fly, Human, Malaria, Mouse, Pig, Rhesus, Rat, Worm, Xenopus, Yeast, and Zebrafish.

Author: Guangchuang Yu

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("GOSemSim")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GOSemSim")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GOSemSim")

PDF		An introduction to GOSemSim
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, Clustering, GO, Pathways, Software
Version	1.14.0
In Bioconductor since	BioC 2.4 (R-2.9) (7 years)
License	GPL-2
Depends	R (>= 2.10)
Imports	methods, AnnotationDbi, GO.db, org.Hs.eg.db
LinkingTo
Suggests	DOSE, clusterProfiler
SystemRequirements
Enhances
URL	http://bioinformatics.oxfordjournals.org/content/26/7/976.full
Depends On Me
Imports Me
Suggests Me	clusterProfiler, DOSE, ReactomePA
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	GOSemSim_1.14.0.tar.gz
Windows Binary	GOSemSim_1.14.0.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/GOSemSim/tree/release-2.10
Package Short Url	http://bioconductor.org/packages/GOSemSim/
Package Downloads Report	Download Stats

Documentation »

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