To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DiffBind")

In most cases, you don't need to download the package archive at all.

DiffBind

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see DiffBind.

Differential Binding Analysis of ChIP-Seq peak data

Bioconductor version: 2.10

Compute differentially bound sites from multiple ChIP-seq experiments using affinity (quantitative) data. Also enables occupancy (overlap) analysis and plotting functions.

Author: Rory Stark<rory.stark at cancer.org.uk>, Gordon Brown <gordon.brown at cancer.org.uk>

Maintainer: Rory Stark<rory.stark at cancer.org.uk>

Citation (from within R, enter citation("DiffBind")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DiffBind")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DiffBind")

PDF		DiffBind User's Guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, ChIPseq, HighThroughputSequencing, Software
Version	1.2.4
In Bioconductor since	BioC 2.9 (R-2.14) (4.5 years)
License	Artistic-2.0
Depends	R (>= 2.14.0), GenomicRanges
Imports	RColorBrewer, amap, edgeR(>= 2.3.58), gplots, limma, DESeq, grDevices, stats, utils, IRanges, zlibbioc
LinkingTo	Rsamtools
Suggests	DESeq
SystemRequirements
Enhances	rgl, parallel
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	DiffBind_1.2.4.tar.gz
Windows Binary	DiffBind_1.2.4.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/DiffBind/tree/release-2.10
Package Short Url	http://bioconductor.org/packages/DiffBind/
Package Downloads Report	Download Stats

Documentation »

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