To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChIPsim")

In most cases, you don't need to download the package archive at all.

ChIPsim

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see ChIPsim.

Simulation of ChIP-seq experiments

Bioconductor version: 2.10

A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.

Author: Peter Humburg

Maintainer: Peter Humburg <Peter.Humburg at well.ox.ac.uk>

Citation (from within R, enter citation("ChIPsim")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChIPsim")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChIPsim")

PDF		Simulating ChIP-seq experiments
PDF		Reference Manual

Details

biocViews	Bioinformatics, ChIPseq, Infrastructure, Software
Version	1.10.0
In Bioconductor since	BioC 2.5 (R-2.10) (6.5 years)
License	GPL (>= 2)
Depends	Biostrings
Imports	IRanges, Biostrings, ShortRead, graphics, methods, stats, utils
LinkingTo
Suggests	actuar, zoo
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	ChIPsim_1.10.0.tar.gz
Windows Binary	ChIPsim_1.10.0.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/ChIPsim/tree/release-2.10
Package Short Url	http://bioconductor.org/packages/ChIPsim/
Package Downloads Report	Download Stats

Documentation »

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