To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CGHcall")

In most cases, you don't need to download the package archive at all.

CGHcall

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see CGHcall.

Calling aberrations for array CGH tumor profiles.

Bioconductor version: 2.10

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

Author: Sjoerd Vosse and Mark van de Wiel

Maintainer: Mark van de Wiel <mark.vdwiel at vumc.nl>

Citation (from within R, enter citation("CGHcall")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CGHcall")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CGHcall")

PDF		CGHcall
PDF		Reference Manual

Details

biocViews	Microarray, Preprocessing, Software, Visualization
Version	2.16.0
In Bioconductor since	BioC 2.1 (R-2.6) (8.5 years)
License	GPL (http://www.gnu.org/copyleft/gpl.html)
Depends	R (>= 2.0.0), impute(>= 1.8.0), DNAcopy(>= 1.6.0), methods, Biobase, CGHbase
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	CGHnormaliter
Imports Me	CGHnormaliter
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	CGHcall_2.16.0.tar.gz
Windows Binary	CGHcall_2.16.0.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/CGHcall/tree/release-2.10
Package Short Url	http://bioconductor.org/packages/CGHcall/
Package Downloads Report	Download Stats

Documentation »

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