safe

Significance Analysis of Function and Expression

SAFE is a permutation-based method for testing functional categories is gene expression experiments. SAFE can be applied to 2-sample and multi-class comparisons, or simple linear regressions. Other experimental designs can also be accommodated through user-defined functions.

Author	William T. Barry
Maintainer	William T. Barry

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("safe")

Vignettes (Documentation)

Package Downloads

SAFEmanual.pdf

Source	safe_1.10.0.tar.gz
Windows binary	safe_1.10.0.zip
OS X binary	safe_1.10.0.tgz

Details

biocViews	Microarray , DifferentialExpression
Depends	R, methods, Biobase
Suggests	multtest, hu6800
Imports
SystemRequirements
License	GPL version 2 or newer
URL
dependsOnMe
suggestsMe