marray

Exploratory analysis for two-color spotted microarray data

Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.

Author Yee Hwa (Jean) Yang with contributions from Agnes Paquet and Sandrine Dudoit.
Maintainer Yee Hwa (Jean) Yang

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("marray")

Vignettes (Documentation)

Package Downloads
ExampleHTML.pdf
marray.pdf
marrayClasses.pdf
marrayClassesShort.pdf
marrayInput.pdf
marrayNorm.pdf
marrayPlots.pdf
widget1.pdf
Source marray_1.16.0.tar.gz
Windows binary marray_1.16.0.zip
OS X binary marray_1.16.0.tgz

Details

biocViews
Microarray , TwoChannel , Preprocessing
Depends R, limma, methods
Suggests tkWidgets
Imports
SystemRequirements
License LGPL
URL http://www.maths.usyd.edu.au/u/jeany/
dependsOnMe GeneTraffic, OLIN, RMAGEML, arrayQuality, cghMCR, convert, maigesPack, nnNorm, stepNorm
suggestsMe Mfuzz, hexbin, limma, maSigPro