exonmap

High level analysis of Affymetrix exon array data

Provides high level functions for reading Affy .CEL files, phenotypic data, and then computing simple things with it, such as fold-changes t-test and so on. Applies fine grained genome-wide annotation to the data.

Author Michal Okoniewski, Tim Yates, Crispin J Miller
Maintainer Crispin Miller

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("exonmap")

Vignettes (Documentation)

Package Downloads
INSTALL.pdf
exonmap.example.pdf
exonmap.pdf
Source exonmap_1.4.3.tar.gz
Windows binary exonmap_1.4.3.zip
OS X binary exonmap_1.4.3.tgz

Details

biocViews
Microarray , OneChannel , Preprocessing , Transcription , DataImport , Statistics , DifferentialExpression , Annotation , ReportWriting , Visualization
Depends R, affy, simpleaffy, genefilter, RColorBrewer, RMySQL, DBI, methods, plier
Suggests
Imports
SystemRequirements
License GPL version 2 or later
URL http://www.bioconductor.org, http://bioinformatics.picr.man.ac.uk
dependsOnMe
suggestsMe