annotate

Annotation for microarrays

Using R enviroments for annotation.

Author R. Gentleman
Maintainer Biocore Team c/o BioC user list

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("annotate")

Vignettes (Documentation)

Package Downloads
GOusage.pdf
annotate.pdf
chromLoc.pdf
prettyOutput.pdf
query.pdf
useDataPkgs.pdf
useHomology.pdf
useProbeInfo.pdf
Source annotate_1.16.1.tar.gz
Windows binary annotate_1.16.1.zip
OS X binary annotate_1.16.1.tgz

Details

biocViews
Annotation , Pathways , GO , Affymetrix
Depends R, methods, Biobase, AnnotationDbi, xtable
Suggests hgu95av2, hgu95av2.db, genefilter, Biostrings, rae230a, rae230aprobe, tkWidgets, XML, hsahomology, xlahomology, GO
Imports methods, AnnotationDbi
SystemRequirements
License Artistic-2.0
URL
dependsOnMe AnnBuilder, Category, GOstats, SAGElyzer, SemSim, affycoretools, codelink, geneplotter, globaltest, goTools, iSNetwork, idiogram, lumi, macat, ontoTools, puma, splicegear
suggestsMe biomaRt, maigesPack, oneChannelGUI, siggenes