CGHcall

Calling aberrations for array CGH tumor profiles.

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

Author	Sjoerd Vosse & Mark van de Wiel
Maintainer	Sjoerd Vosse

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("CGHcall")

Vignettes (Documentation)

Package Downloads

CGHcall.pdf

Source	CGHcall_1.0.1.tar.gz
Windows binary	CGHcall_1.0.1.zip
OS X binary	CGHcall_1.0.1.tgz

Details

biocViews	Microarray , DNACopyNumber , Preprocessing , Visualization
Depends	R, impute, DNAcopy
Suggests
Imports
SystemRequirements
License	GPL (http://www.gnu.org/copyleft/gpl.html)
URL
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