Biostrings

String objects representing biological sequences, and matching algorithms

Class definitions and generics for biological sequences along with pattern matching algorithms.

Author H. Pages, R. Gentleman and S. DebRoy
Maintainer H. Pages

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("Biostrings")

Vignettes (Documentation)

Package Downloads
Alignments.pdf
Biostrings2Classes.pdf
DNAStringVectorization.pdf
matchPattern.pdf
Source Biostrings_2.6.6.tar.gz
Windows binary Biostrings_2.6.6.zip
OS X binary Biostrings_2.6.6.tgz

Details

biocViews
SequenceMatching , Genetics , Infrastructure
Depends R, methods, stats
Suggests RUnit, BSgenome, BSgenome.Celegans.UCSC.ce2, BSgenome.Dmelanogaster.FlyBase.r51, hgu95av2probe
Imports methods, stats
SystemRequirements
License LGPL
URL
dependsOnMe BSgenome
suggestsMe annotate