simpleaffy

Very simple high level analysis of Affymetrix data

Provides high level functions for reading Affy .CEL files, phenotypic data, and then computing simple things with it, such as t-tests, fold changes and the like. Makes heavy use of the affy library. Also has some basic scatter plot functions and mechanisms for generating high resolution journal figures...

Author	Crispin J Miller
Maintainer	Crispin Miller

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("simpleaffy")

Vignettes (Documentation)

Package Downloads

QCandSimpleaffy.pdf

simpleAffy.pdf

Source	simpleaffy_2.10.31.tar.gz
Windows binary	simpleaffy_2.10.31.zip
OS X binary	simpleaffy_2.10.31.tgz

Details

biocViews	Microarray , OneChannel , QualityControl , Preprocessing , Transcription , DataImport , Statistics , DifferentialExpression , Annotation , ReportWriting , Visualization
Depends	R, affy, genefilter, Biobase, methods, utils
Suggests
Imports
SystemRequirements
License	GPL version 2 or later
URL	http://www.bioconductor.org, http://bioinformatics.picr.man.ac.uk/simpleaffy/
dependsOnMe	affyQCReport, exonmap
suggestsMe