multtest
Resampling-based multiple hypothesis testing
Non-parametric bootstrap and permutation resampling-based
multiple testing procedures for controlling the family-wise
error rate (FWER), generalized family-wise error rate (gFWER),
tail probability of the proportion of false positives (TPPFP),
and false discovery rate (FDR). Single-step and step-wise
methods are implemented. Tests based on a variety of t- and
F-statistics (including t-statistics based on regression
parameters from linear and survival models) are included.
Results are reported in terms of adjusted p-values, confindence
regions and test statistic cutoffs. The procedures are directly
applicable to identifying differentially expressed genes in DNA
microarray experiments.
| Author |
Katherine S. Pollard, Yongchao Ge, Sandrine Dudoit |
| Maintainer |
Katherine S. Pollard |
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("multtest")
Vignettes (Documentation)
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Package Downloads
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Details
| biocViews |
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| Depends |
R, methods, Biobase, survival |
| Suggests |
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| Imports |
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| SystemRequirements |
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| License |
LGPL |
| URL |
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| dependsOnMe |
ABarray, LMGene, OCplus, SAGx, aCGH, adSplit, globaltest, siggenes, webbioc |
| suggestsMe |
GOstats, GlobalAncova, annaffy, ecolitk, oneChannelGUI, pcot2, safe, topGO, xcms |