cghMCR

Find chromosome regions showing common gains/losses

Based on the algothrim proposed by Dr. Lynda Chin's lab, this package provides functions that identify chromosome regions that show gains/losses commonly observed across different samples profiled using arrayCGH platform.

Author	J. Zhang and B. Feng
Maintainer	J. Zhang

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("cghMCR")

Vignettes (Documentation)

Package Downloads

findMCR.pdf

Source	cghMCR_1.6.0.tar.gz
Windows binary	cghMCR_1.6.0.zip
OS X binary	cghMCR_1.6.0.tgz

Details

biocViews	Platform , Microarray
Depends	methods, DNAcopy, marray, arrayQuality
Suggests
Imports
SystemRequirements
License	LGPL
URL
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