| Package | Maintainer | Title |
|---|---|---|
| apComplex | Denise Scholtens | Estimate protein complex membership using AP-MS protein data |
| arrayQCplot | Eun-kyung Lee | Explore microarray data and check quality and reproducibility. |
| arrayQuality | A. Paquet | Assessing array quality on spotted arrays |
| BioMVCClass | Elizabeth Whalen | Model-View-Controller (MVC) Classes That Use Biobase |
| cellHTS | Ligia Bras | Analysis of cell-based screens |
| ChromoViz | Jihoon Kim | Multimodal visualization of gene expression data |
| copa | James W. MacDonald | Functions to perform cancer outlier profile analysis. |
| ctc | Antoine Lucas | Cluster and Tree Conversion. |
| EBImage | Oleg Sklyar | Image processing and analysis toolkit for R |
| ecolitk | Laurent | Meta-data and tools for E. coli |
| gaggle | Paul Shannon | Broadcast data between R and Java bioinformatics programs |
| geneplotter | Biocore Team | Grapics related functions for Bioconductor |
| GeneTS | Korbinian Strimmer | Microarray Time Series and Network Analysis |
| gff3Plotter | Oleg Sklyar | Plotting Data of Experiments on the Genomic Layout |
| goTools | Agnes Paquet | Functions for Gene Ontology database |
| Heatplus | Alexander Ploner | A heat map displaying covariates and coloring clusters |
| hexbin | Nicholas Lewin-Koh | Hexagonal Binning Routines |
| idiogram | Karl J. Dykema | idiogram |
| iSNetwork | Elizabeth Whalen | Interactive Network Plots |
| iSPlot | Elizabeth Whalen | Linking Plots |
| macat | Joern Toedling | MicroArray Chromosome Analysis Tool |
| maCorrPlot | Alexander Ploner | Visualize artificial correlation in microarray data |
| maDB | Johannes Rainer | Microarray database and utility functions for microarray data analysis. |
| MergeMaid | Xiaogang Zhong | Merge Maid |
| MVCClass | Elizabeth Whalen | Model-View-Controller (MVC) Classes |
| OLIN | Matthias Futschik | Optimized local intensity-dependent normalisation of two-color microarrays |
| OLINgui | Matthias Futschik | Graphical user interface for OLIN |
| prada | Florian Hahne | Data analysis for cell-based functional assays |
| quantsmooth | Jan Oosting | Quantile smoothing and genomic visualization of array data |
| reb | Karl J. Dykema | Regional Expression Biases |
| simpleaffy | Crispin Miller | Very simple high level analysis of Affymetrix data |
| tilingArray | W. Huber | Analysis of high-density oligonucleotide tiling arrays |