Package: ALL Version: 1.2.1 Depends: Biobase (>= 1.9.25) Title: A data package Description: Data of T- and B-cell Acute Lymphocytic Leukemia from the Ritz Laboratory at the DFCI (includes Apr 2004 versions) biocViews: ExperimentData Author: Xiaochun Li Maintainer: Xiaochun Li License: GPL source.ver: src/contrib/ALL_1.2.1.tar.gz win.binary.ver: bin/windows/contrib/2.3/ALL_1.2.1.zip mac.binary.ver: bin/macosx/universal/contrib/2.3/ALL_1.2.1.tgz vignettes: vignettes/ALL/inst/doc/ALLintro-003.pdf, vignettes/ALL/inst/doc/ALLintro.pdf Package: colonCA Version: 1.2.1 Depends: Biobase (>= 1.9.25) Title: exprSet for Alon et al. (1999) colon cancer data Description: exprSet for Alon et al. (1999) colon cancer data biocViews: ExperimentData Author: Sylvia Merk Maintainer: W Sylvia Merk License: unknown source.ver: src/contrib/colonCA_1.2.1.tar.gz win.binary.ver: bin/windows/contrib/2.3/colonCA_1.2.1.zip mac.binary.ver: bin/macosx/universal/contrib/2.3/colonCA_1.2.1.tgz Package: davidTiling Version: 1.0.4 Depends: R (>= 2.3.0), tilingArray (>= 1.8.22), GO Title: Data and analysis scripts for David, Huber et al. yeast tiling array paper Description: This package contains the data for the paper cited below: 8 CEL files of Affymetrix genechips, the eSet object, a probe annotation data structure for the chip, and the yeast genome annotation (GFF file) that was used. In addition, some custom-written analysis functions are provided, as well as R scripts in the scripts directory. Author: Wolfgang Huber , Joern Toedling Maintainer: Wolfgang Huber URL: http://www.ebi.ac.uk/huber License: LGPL source.ver: src/contrib/davidTiling_1.0.4.tar.gz win.binary.ver: bin/windows/contrib/2.3/davidTiling_1.0.4.zip mac.binary.ver: bin/macosx/universal/contrib/2.3/davidTiling_1.0.4.tgz Package: ecoliLeucine Version: 1.0.0 Depends: R (>= 1.9.0), affy Title: Experimental data with Affymetrix E. coli chips Description: Experimental data with Affymetrix E. coli chips, as reported in She-pin Hung, Pierre Baldi, and G. Wesley Hatfield, J. Biol. Chem., Vol. 277, Issue 43, 40309-40323, October 25, 2002 biocViews: ExperimentData Author: Laurent Gautier Maintainer: Laurent License: GPL version 2 or newer source.ver: src/contrib/ecoliLeucine_1.0.0.tar.gz win.binary.ver: bin/windows/contrib/2.3/ecoliLeucine_1.0.0.zip mac.binary.ver: bin/macosx/universal/contrib/2.3/ecoliLeucine_1.0.0.tgz Package: estrogen Version: 1.6.0 Depends: R (>= 1.9.0), affy (>= 1.4) Title: 2x2 factorial design exercise for the Bioconductor short course Description: Data from 8 Affymetrix genechips, looking at a 2x2 factorial design (with 2 repeats per level) Author: Wolfgang Huber, Robert Gentleman Maintainer: R. Gentleman License: LGPL source.ver: src/contrib/estrogen_1.6.0.tar.gz win.binary.ver: bin/windows/contrib/2.3/estrogen_1.6.0.zip mac.binary.ver: bin/macosx/universal/contrib/2.3/estrogen_1.6.0.tgz vignettes: vignettes/estrogen/inst/doc/estrogen-boxplotb.pdf, vignettes/estrogen/inst/doc/estrogen-hist.pdf, vignettes/estrogen/inst/doc/estrogen.pdf Package: faahKO Version: 1.0 Depends: R Suggests: xcms Title: Saghatelian et al. (2004) FAAH knockout LC/MS data Description: Positive ionization mode data in NetCDF file format. Centroided subset from 200-600 m/z and 2500-4500 seconds. Data originally reported in "Assignement of Endogenous Substrates to Enzymes by Global Metabolite Profiling" Biochemistry; 2004; 43(45). Also includes detected peaks in an xcmsSet. Author: Colin A. Smith Maintainer: Colin A. Smith URL: http://dx.doi.org/10.1021/bi0480335 License: unknown source.ver: src/contrib/faahKO_1.0.tar.gz win.binary.ver: bin/windows/contrib/2.3/faahKO_1.0.zip mac.binary.ver: bin/macosx/universal/contrib/2.3/faahKO_1.0.tgz Package: fibroEset Version: 1.2.1 Depends: Biobase (>= 1.9.25) Title: exprSet for Karaman et al. (2003) fibroblasts data Description: exprSet for Karaman et al. (2003) human, bonobo and gorilla fibroblasts data biocViews: ExperimentData Author: Sylvia Merk Maintainer: Sylvia Merk License: unknown source.ver: src/contrib/fibroEset_1.2.1.tar.gz win.binary.ver: bin/windows/contrib/2.3/fibroEset_1.2.1.zip mac.binary.ver: bin/macosx/universal/contrib/2.3/fibroEset_1.2.1.tgz Package: golubEsets Version: 1.2.4 Depends: Biobase(>= 1.9.14) Title: exprSets for golub leukemia data Description: representation of public golub data with some covariate data of provenance unknown to the maintainer at present; now employs ExpressionSet format biocViews: ExperimentData Author: Todd Golub Maintainer: Vince Carey License: unknown source.ver: src/contrib/golubEsets_1.2.4.tar.gz win.binary.ver: bin/windows/contrib/2.3/golubEsets_1.2.4.zip mac.binary.ver: bin/macosx/universal/contrib/2.3/golubEsets_1.2.4.tgz Package: Iyer517 Version: 1.2.0 Depends: Biobase (>= 1.9.25) Title: exprSets for Iyer, Eisen et all 1999 Science paper Description: representation of public Iyer data from http://genome-www.stanford.edu/serum/clusters.html biocViews: ExperimentData Author: Vishy Iyer Maintainer: Vince Carey License: unknown source.ver: src/contrib/Iyer517_1.2.0.tar.gz win.binary.ver: bin/windows/contrib/2.3/Iyer517_1.2.0.zip mac.binary.ver: bin/macosx/universal/contrib/2.3/Iyer517_1.2.0.tgz vignettes: vignettes/Iyer517/inst/doc/Iyer517.pdf Package: SpikeIn Version: 1.2.0 Depends: R (>= 1.6), affy (>= 1.0) Title: Affymetrix's Spike-In Experiment Data Description: Contains the HGU133 and HGU95 spikein experiment data. biocViews: ExperimentData Author: Rafael Irizarry Maintainer: Rafael A. Irizarry License: LGPL source.ver: src/contrib/SpikeIn_1.2.0.tar.gz win.binary.ver: bin/windows/contrib/2.3/SpikeIn_1.2.0.zip mac.binary.ver: bin/macosx/universal/contrib/2.3/SpikeIn_1.2.0.tgz Package: yeastCC Version: 1.0.0 Depends: Biobase (>= 1.9.25) Title: Spellman et al. (1998) yeast cell cycle microarray data Description: exprSet for Spellman et al. (1998) yeast cell cycle microarray experiment biocViews: ExperimentData Author: Sandrine Dudoit Maintainer: Sandrine Dudoit License: unknown source.ver: src/contrib/yeastCC_1.0.0.tar.gz win.binary.ver: bin/windows/contrib/2.3/yeastCC_1.0.0.zip mac.binary.ver: bin/macosx/universal/contrib/2.3/yeastCC_1.0.0.tgz vignettes: vignettes/yeastCC/inst/doc/Spellmanetal.pdf