| Package | Maintainer | Title |
|---|---|---|
| aCGH | Jane Fridlyand | Classes and functions for Array Comparative Genomic Hybridization data. |
| affxparser | James Bullard | Affymetrix File Parsing SDK |
| affyio | Benjamin Milo Bolstad | Tools for parsing Affymetrix data files |
| affylmGUI | Keith Satterley | GUI for affy analysis using limma package |
| arrayMagic | Andreas Buness | two-colour cDNA array quality control and preprocessing |
| codelink | Diego Díez | Manipulation of Codelink Bioarrays data. |
| ctc | Antoine Lucas | Cluster and Tree Conversion. |
| GEOquery | Sean Davis | Get data from NCBI Gene Expression Omnibus (GEO) |
| limma | Gordon Smyth | Linear Models for Microarray Data |
| limmaGUI | Keith Satterley | GUI for limma package |
| makecdfenv | James W. MacDonald | CDF Environment Maker |
| MANOR | Pierre Neuvial | Micro-Array NORmalization |
| simpleaffy | Crispin Miller | Very simple high level analysis of Affymetrix data |