Package
|
Maintainer
|
Title
|
affycoretools
|
James W. MacDonald
|
Functions useful for those doing repetitive analyses with
Affymetrix GeneChips.
|
altcdfenvs
|
Laurent Gautier
|
alternative cdfenvs
|
annaffy
|
Colin A. Smith
|
Annotation tools for Affymetrix biological metadata
|
AnnBuilder
|
J. Zhang
|
Bioconductor annotation data package builder
|
annotate
|
Biocore Team
|
Annotation for microarrays
|
biomaRt
|
Steffen Durinck
|
Interface to BioMart databases (e.g. Ensembl)
|
Category
|
R. Gentleman
|
Category Analysis
|
ChromoViz
|
Jihoon Kim
|
Multimodal visualization of gene expression data
|
DynDoc
|
Biocore Team
|
Dynamic document tools
|
ecolitk
|
Laurent
|
Meta-data and tools for E. coli
|
GeneR
|
Y. d'Aubenton-Carafa
|
R for genes and sequences analysis
|
GlobalAncova
|
R. Meister
|
Calculates a global test for differential gene expression
between groups
|
globaltest
|
Jelle Goeman
|
Testing Association of Groups of Genes with a Clinical Variable
|
goCluster
|
Gunnar Wrobel
|
Analysis of clustering results in conjunction with annotation
data.
|
GOstats
|
R. Gentleman
|
Tools for manipulating GO and microarrays.
|
goTools
|
Agnes Paquet
|
Functions for Gene Ontology database
|
KEGGSOAP
|
J. Zhang
|
Client-side SOAP access KEGG
|
matchprobes
|
Biocore Team
|
Tools for sequence matching of probes on arrays
|
Resourcerer
|
Jianhua Zhang
|
Reads annotation data from TIGR Resourcerer or convert the
annotation data into Bioconductor data pacakge.
|
RMAPPER
|
VJ Carey
|
interface to mapper.chip.org
|
RSNPper
|
VJ Carey
|
interface to chip.org::SNPper for SNP-related data
|
simpleaffy
|
Crispin Miller
|
Very simple high level analysis of Affymetrix data
|