Analyzing DNA Microarray Data Using Bioconductor
Sandrine Dudoit and Robert Gentleman
Fred Hutchinson Cancer Research Center
December 4-6, 2002
Schedule
Wednesday, December 4th
AM
Outline (Slides in pdf)
Introduction to Genome Biology
(Slides in pdf)
Introduction to DNA Microarray Technologies
(Slides in pdf)
PM
Pre-processing DNA Microarray Data
(Slides in pdf)
LAB: R and Bioconductor Basics
(Slides in pdf,
Seattle R package: Lab1.Rnw)
Thursday, December 5th
AM
Using Bioconductor Packages
(Slides in pdf)
LAB: Using Bioconductor Packages Seattle R package: Lab1.Rnw)
PM
LAB: Bioconductor Packages for Pre-processing DNA Microarray Data
Seattle R package: Lab4a.Rnw, Lab4b.Rnw)
Only one PM session
Friday, December 6th
AM
Distances (Slides in pdf),
Cluster Analysis (Slides in pdf)
LAB: Distances, Cluster Analysis Seattle R package: Lab3.Rnw)
PM
Feature Selection, Classification
LAB: Feature Selection, Classification Seattle R package: Lab5.Rnw)