seqLogo

Sequence logos for DNA sequence alignments

Bioconductor version: Release (2.7)

seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).

Author: Oliver Bembom

Maintainer: Oliver Bembom

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("seqLogo")    

Documentation

PDF

R Script

Sequence logos for DNA sequence alignments

Reference Manual

Details

biocViews	SequenceMatching
Depends	methods, grid
Imports
Suggests
System Requirements
License	LGPL (>= 2)
URL
Depends On Me	cosmo, rGADEM
Imports Me	rGADEM
Suggests Me	BCRANK
Version	1.16.0

Package Downloads

Package Source	seqLogo_1.16.0.tar.gz
Windows Binary	seqLogo_1.16.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	seqLogo_1.16.0.tgz
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