safe

Significance Analysis of Function and Expression

Bioconductor version: Release (2.7)

SAFE is a resampling-based method for testing functional categories is gene expression experiments. SAFE can be applied to 2-sample and multi-class comparisons, or simple linear regressions. Other experimental designs can also be accommodated through user-defined functions.

Author: William T. Barry

Maintainer: William T. Barry

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("safe")    

Documentation

PDF

R Script

SAFE manual

Reference Manual

Details

biocViews	FunctionalAnnotation
Depends	R, Biobase, annotate, methods
Imports	SparseM, GO.db, annotate, AnnotationDbi, survival, Biobase
Suggests	GO.db, GOstats, Rgraphviz, multtest, hu6800.db, survival
System Requirements
License	GPL (>= 2)
URL	http://www.duke.edu/~dinbarry/SAFE/
Depends On Me
Imports Me
Suggests Me
Version	2.10.1

Package Downloads

Package Source	safe_2.10.1.tar.gz
Windows Binary	safe_2.10.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	safe_2.10.1.tgz
Package Downloads Report	Download Stats