pdInfoBuilder

Platform Design Information Package Builder

Bioconductor version: Release (2.7)

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

Author: Seth Falcon, Benilton Carvalho with contributions by Vince Carey and Matt Settles

Maintainer: Benilton Carvalho

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("pdInfoBuilder")    

Documentation

PDF	R Script	Building Annotation Packages with pdInfoBuilder for Use with the oligo Package
PDF	R Script	PDInfo Package Building Affymetrix Mapping Chips

Reference Manual

Details

biocViews	Annotation, Infrastructure
Depends	R, methods, Biobase, RSQLite, affxparser, oligo
Imports	Biostrings, IRanges
Suggests
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version	1.14.1

Package Downloads

Package Source	pdInfoBuilder_1.14.1.tar.gz
Windows Binary	pdInfoBuilder_1.14.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	pdInfoBuilder_1.14.1.tgz
Package Downloads Report	Download Stats