marray

Exploratory analysis for two-color spotted microarray data

Bioconductor version: Release (2.7)

Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.

Author: Yee Hwa (Jean) Yang with contributions from Agnes Paquet and Sandrine Dudoit.

Maintainer: Yee Hwa (Jean) Yang

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("marray")    

Documentation

PDF		ExampleHTML.pdf
PDF	R Script	marray Normalization
PDF	R Script	marray Overview
PDF	R Script	marrayClasses Overview
PDF	R Script	marrayClasses Tutorial (short)
PDF	R Script	marrayInput Introduction
PDF	R Script	marrayPlots Overview
PDF		widget1.pdf

Reference Manual

Details

biocViews	Microarray, TwoChannel, Preprocessing
Depends	R, limma, methods
Imports
Suggests	tkWidgets
System Requirements
License	LGPL
URL	http://www.maths.usyd.edu.au/u/jeany/
Depends On Me	CGHbase, OLIN, RMAGEML, convert, dyebias, maigesPack, nnNorm, stepNorm
Imports Me	GeneTraffic, OLIN, OLINgui, arrayQualityMetrics, arrayQuality, nnNorm, stepNorm, timecourse
Suggests Me	Agi4x44PreProcess, AgiMicroRna, DEGraph, Mfuzz, hexbin
Version	1.28.0

Package Downloads

Package Source	marray_1.28.0.tar.gz
Windows Binary	marray_1.28.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	marray_1.28.0.tgz
Package Downloads Report	Download Stats