VanillaICE

A Hidden Markov Model for high throughput genotyping arrays

Bioconductor version: Release (2.7)

Hidden Markov Models for characterizing chromosomal alterations in high throughput SNP arrays

Author: Robert Scharpf, Kevin Scharpf, and Ingo Ruczinski

Maintainer: Robert Scharpf

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("VanillaICE")    

Documentation

PDF

R Script

VanillaICE Vignette

Reference Manual

Details

biocViews	Bioinformatics, CopyNumberVariants, SNP, GeneticVariability, Visualization
Depends	R, crlmm, IRanges, oligoClasses, methods
Imports	SNPchip, stats
Suggests	genomewidesnp6Crlmm, hapmapsnp6, RColorBrewer, genefilter, RSQLite
System Requirements
License	LGPL-2
URL
Depends On Me
Imports Me
Suggests Me	SNPchip
Version	1.12.4

Package Downloads

Package Source	VanillaICE_1.12.4.tar.gz
Windows Binary	VanillaICE_1.12.4.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	VanillaICE_1.12.4.tgz
Package Downloads Report	Download Stats