GGBase

infrastructure for genetics of gene expression (c) 2008 VJ Carey

Bioconductor version: Release (2.7)

infrastructure for dealing with hapmap SNP reports, GWAS, etc.

Author: Vince Carey

Maintainer: Vince Carey

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("GGBase")    

Documentation

PDF	R Script	GGBase overview
PDF	R Script	smlSet construction overview
PDF	R Script	snp location metadata overview

Reference Manual

Details

biocViews	SNP, GeneticVariability, Genetics, Bioinformatics
Depends	R, methods, Biobase, snpMatrix, RSQLite
Imports	AnnotationDbi, GSEABase
Suggests	illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP.20071016, SNPlocs.Hsapiens.dbSNP.20090506
System Requirements
License	Artistic-2.0
URL
Depends On Me	GGtools
Imports Me
Suggests Me
Version	3.10.0

Package Downloads

Package Source	GGBase_3.10.0.tar.gz
Windows Binary	GGBase_3.10.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	GGBase_3.10.0.tgz
Package Downloads Report	Download Stats