simpIntLists

The package contains BioGRID interactions for various organisms in a simple format

Bioconductor version: Development (2.8)

The package contains BioGRID interactions for arabidopsis(thale cress), c.elegans, fruit fly, human, mouse, yeast( budding yeast ) and S.pombe (fission yeast) . Entrez ids, official names and unique ids can be used to find proteins. The format of interactions are lists. For each gene/protein, there is an entry in the list with "name" containing name of the gene/protein and "interactors" containing the list of genes/proteins interacting with it.

Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin-Atalay

Maintainer: Kircicegi Korkmaz

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("simpIntLists")    

Documentation

PDF

R Script

simpIntLists

Reference Manual

Details

biocViews	ExperimentData
Depends
Imports
Suggests
System Requirements
License	GPL (>= 2)
URL
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Version	0.99.0

Package Downloads

Package Source	simpIntLists_0.99.0.tar.gz
Windows Binary	simpIntLists_0.99.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	simpIntLists_0.99.0.tgz
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