snpStats

SnpMatrix and XSnpMatrix classes and methods

Bioconductor version: Development (2.8)

Classes and statistical methods for large SNP association studies, extending the snpMatrix package

Author: David Clayton

Maintainer: David Clayton

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("snpStats")    

Documentation

PDF	R Script	Data input
PDF	R Script	Imputation and meta-analysis
PDF	R Script	LD statistics
PDF	R Script	Principal components analysis
PDF	R Script	snpMatrix-differences
PDF	R Script	snpStats introduction
PDF	R Script	TDT tests

Reference Manual

Details

biocViews	Microarray, SNP, GeneticVariability
Depends	R, survival, methods, Matrix
Imports	graphics, grDevices, methods, stats, survival, utils, Matrix
Suggests	hexbin
System Requirements
License	GPL-3
URL	http://www-gene.cimr.cam.ac.uk/clayton
Depends On Me	GGBase, GGtools
Imports Me
Suggests Me
Version	1.1.15

Package Downloads

Package Source	snpStats_1.1.15.tar.gz
Windows Binary	snpStats_1.1.13.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	snpStats_1.1.14.tgz
Package Downloads Report	Download Stats