siggenes

Multiple testing using SAM and Efron's empirical Bayes approaches

Bioconductor version: Development (2.8)

Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).

Author: Holger Schwender

Maintainer: Holger Schwender

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("siggenes")    

Documentation

PDF R Script siggenes Manual
PDF siggenesRnews.pdf

Reference Manual

Details

biocViews Statistics, MultipleComparisons, Microarray, GeneExpression, SNP, ExonArray, DifferentialExpression
Depends methods, multtest, Biobase, splines
Imports
Suggests affy, annotate, genefilter, KernSmooth, scrime
System Requirements
License LGPL (>= 2)
URL
Depends On Me KCsmart
Imports Me charm
Suggests Me GeneSelector, XDE, logicFS, oneChannelGUI
Version 1.25.0

Package Downloads

Package Source siggenes_1.25.0.tar.gz
Windows Binary siggenes_1.25.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary siggenes_1.25.0.tgz
Package Downloads Report Download Stats

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