seqbias

Estimation of per-position bias in high-throughput sequencing data

Bioconductor version: Development (2.8)

This package implements a model of per-position sequencing bias in high-throughput sequencing data using a simple Bayesian network, the structure and parameters of which are trained on a set of aligned reads and a reference genome sequence.

Author: Daniel Jones

Maintainer: Daniel Jones

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("seqbias")    

Documentation

PDF

R Script

Assessing and Adjusting for Technical Bias in High Throughput Sequencing Data

Reference Manual

Details

biocViews	Sequencing, HighThroughputSequencing
Depends	R, GenomicRanges, Biostrings, methods
Imports
Suggests
System Requirements
License	LGPL-3
URL
Depends On Me
Imports Me
Suggests Me
Version	0.99.10

Package Downloads

Package Source	seqbias_0.99.10.tar.gz
Windows Binary	seqbias_0.99.5.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	seqbias_0.99.9.tgz
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