sagenhaft

Collection of functions for reading and comparing SAGE libraries

Bioconductor version: Development (2.8)

This package implements several functions useful for analysis of SAGE (Serial Analysis of Gene Expressen) data, i.e. extraction of a SAGE library from sequence files, sequence error correction, library comparison.

Author: Tim Beissbarth, with contributions from Gordon Smyth and Lavinia Hyde .

Maintainer: Tim Beissbarth

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("sagenhaft")    

Documentation

PDF

R Script

SAGEnhaft

Reference Manual

Details

biocViews	SAGE
Depends	R, SparseM, methods
Imports	graphics, methods, SparseM, stats, utils
Suggests
System Requirements
License	GPL (>= 2)
URL	http://tagcalling.mbgproject.org
Depends On Me
Imports Me
Suggests Me
Version	1.21.0

Package Downloads

Package Source	sagenhaft_1.21.0.tar.gz
Windows Binary	sagenhaft_1.21.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	sagenhaft_1.21.0.tgz
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