rama

Robust Analysis of MicroArrays

Bioconductor version: Development (2.8)

Robust estimation of cDNA microarray intensities with replicates. The package uses a Bayesian hierarchical model for the robust estimation. Outliers are modeled explicitly using a t-distribution, and the model also addresses classical issues such as design effects, normalization, transformation, and nonconstant variance.

Author: Raphael Gottardo

Maintainer: Raphael Gottardo

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("rama")    

Documentation

PDF R Script rama Tutorial

Reference Manual

Details

biocViews Microarray, TwoChannel, QualityControl, Preprocessing
Depends R
Imports
Suggests
System Requirements
License GPL (>= 2)
URL
Depends On Me bridge
Imports Me
Suggests Me
Version 1.25.1

Package Downloads

Package Source rama_1.25.1.tar.gz
Windows Binary rama_1.25.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary rama_1.25.1.tgz
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Fred Hutchinson Cancer Research Center