genefilter

genefilter: methods for filtering genes from microarray experiments

Bioconductor version: Development (2.8)

Some basic functions for filtering genes

Author: R. Gentleman, V. Carey, W. Huber, F. Hahne

Maintainer: Biocore Team c/o BioC user list

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("genefilter")    

Documentation

PDF R Script Diagnostic plots for independent filtering
PDF R Script How to find genes whose expression profile is similar to that of specified genes
PDF R Script Using the genefilter function to filter genes from a microarray dataset

Reference Manual

Details

biocViews Bioinformatics, Microarray
Depends
Imports AnnotationDbi, annotate, Biobase, graphics, methods, stats, survival
Suggests Biobase, class, hgu95av2.db, methods, tkWidgets, ALL
System Requirements
License Artistic-2.0
URL
Depends On Me Agi4x44PreProcess, CNTools, GeneMeta, MLInterfaces, cellHTS2, cellHTS, charm, eisa, exonmap, simpleaffy
Imports Me Category, DESeq, GSRI, Ringo, XDE, affyQCReport, affycoretools, arrayQualityMetrics, crlmm, methylumi, phenoTest, simpleaffy, tilingArray
Suggests Me AffyExpress, ArrayTools, BioNet, BiocCaseStudies, Category, GGtools, GOstats, GSEAlm, MCRestimate, SNPchip, VanillaICE, XDE, annotate, clusterStab, codelink, factDesign, logicFS, lumi, oligo, oneChannelGUI, pvac, qpgraph, rtracklayer, siggenes, topGO
Version 1.33.1

Package Downloads

Package Source genefilter_1.33.1.tar.gz
Windows Binary genefilter_1.33.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary genefilter_1.33.1.tgz
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