cn.farms

cn.farms - Factor Analysis for copy number estimation

Bioconductor version: Development (2.8)

This package implements the cn.FARMS algorithm for copy number variation (CNV) analysis. cn.FARMS allows to analyse all existing Affymetix (10K-SNP6.0) array types, supports high-performance clustering using snow and ff.

Author: Andreas Mitterecker, Djork-Arne Clevert

Maintainer: Andreas Mitterecker , Djork-Arne Clevert

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("cn.farms")    

Documentation

PDF	R Script	cn.farms: Manual for the R package
PDF		figure1.pdf
PDF		figure2.pdf

Reference Manual

Details

biocViews	Microarray, Bioinformatics, CopyNumberVariants
Depends	R, Biobase, methods, ff
Imports	DBI, affxparser, oligo, oligoClasses, snowfall, DNAcopy, preprocessCore, lattice
Suggests	pd.mapping250k.sty, pd.mapping250k.nsp, pd.genomewidesnp.5, pd.genomewidesnp.6
System Requirements
License	LGPL (>= 2)
URL
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Imports Me
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Version	0.99.5

Package Downloads

Package Source	cn.farms_0.99.5.tar.gz
Windows Binary
MacOS 10.5 (Leopard) binary
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