clusterProfiler

statistical analysis and visulization of functional profiles for genes and gene clusters

Bioconductor version: Development (2.8)

The package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu

Maintainer: Guangchuang Yu

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("clusterProfiler")    

Documentation

PDF

R Script

An introduction to clusterProfiler

Reference Manual

Details

biocViews	Clustering, GO, Pathways, Visualization
Depends	ggplot2, fdrtool
Imports	methods, plyr, AnnotationDbi, GO.db, KEGG.db, Category, GOstats, org.Hs.eg.db, org.Mm.eg.db
Suggests	GOSemSim
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me	GOSemSim
Version	0.99.13

Package Downloads

Package Source	clusterProfiler_0.99.13.tar.gz
Windows Binary	clusterProfiler_0.99.13.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	clusterProfiler_0.99.13.tgz
Package Downloads Report	Download Stats