chipseq

chipseq: A package for analyzing chipseq data

Bioconductor version: Development (2.8)

Tools for helping process short read data for chipseq experiments

Author: Deepayan Sarkar, Robert Gentleman, Michael Lawrence, Zizhen Yao

Maintainer: Biocore Team c/o BioC user list

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("chipseq")    

Documentation

PDF R Script A Sample ChIP-Seq analysis workflow

Reference Manual

Details

biocViews ChIPseq
Depends methods, IRanges, GenomicRanges, BSgenome, ShortRead
Imports BSgenome, GenomicRanges, IRanges, lattice, methods, ShortRead, stats
Suggests GenomicFeatures, BSgenome.Mmusculus.UCSC.mm9
System Requirements
License Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me oneChannelGUI
Version 1.1.2

Package Downloads

Package Source chipseq_1.1.2.tar.gz
Windows Binary chipseq_1.1.2.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary chipseq_1.1.2.tgz
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