arrayQualityMetrics

Quality metrics on microarray data sets

Bioconductor version: Development (2.8)

This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). Report contain both general and platform-specific sections. Both one and two colour array platforms are supported.

Author: Audrey Kauffmann, Wolfgang Huber

Maintainer: Audrey Kauffmann

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("arrayQualityMetrics")    

Documentation

PDF	R Script	Customizing arrayQualityMetrics reports
PDF	R Script	Quality assessment with arrayQualityMetrics

Reference Manual

Details

biocViews	Microarray, QualityControl, OneChannel, TwoChannel, ReportWriting
Depends
Imports	affy, affyPLM, beadarray, Biobase, Cairo, genefilter, graphics, grDevices, grid, Hmisc, hwriter, lattice, latticeExtra, limma, methods, RColorBrewer, setRNG, simpleaffy, stats, SVGAnnotation, utils, vsn, XML
Suggests	ALLMLL, CCl4
System Requirements
License	LGPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me	ArrayExpress
Version	3.7.2

Package Downloads

Package Source	arrayQualityMetrics_3.7.2.tar.gz
Windows Binary	arrayQualityMetrics_3.7.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	arrayQualityMetrics_3.7.1.tgz
Package Downloads Report	Download Stats