annaffy

Annotation tools for Affymetrix biological metadata

Bioconductor version: Development (2.8)

Functions for handling data from Bioconductor Affymetrix annotation data packages. Produces compact HTML and text reports including experimental data and URL links to many online databases. Allows searching biological metadata using various criteria.

Author: Colin A. Smith

Maintainer: Colin A. Smith

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("annaffy")    

Documentation

PDF R Script annaffy Primer

Reference Manual

Details

biocViews OneChannel, Microarray, Annotation, GO, Pathways, ReportWriting
Depends R, methods, Biobase, GO.db, KEGG.db
Imports AnnotationDbi
Suggests hgu95av2.db, multtest, tcltk
System Requirements
License LGPL
URL
Depends On Me PGSEA, webbioc
Imports Me GGtools, affycoretools
Suggests Me AffyExpress, ArrayTools, BiocCaseStudies, maDB, oneChannelGUI
Version 1.23.1

Package Downloads

Package Source annaffy_1.23.1.tar.gz
Windows Binary annaffy_1.23.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary annaffy_1.23.1.tgz
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