affyQCReport

QC Report Generation for affyBatch objects

Bioconductor version: Development (2.8)

This package creates a QC report for an AffyBatch object. The report is intended to allow the user to quickly assess the quality of a set of arrays in an AffyBatch object.

Author: Craig Parman, Conrad Halling , Robert Gentleman

Maintainer: Craig Parman

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("affyQCReport")    

Documentation

PDF

R Script

affyQCReport: Methods for Generating Affymetrix QC Reports

Reference Manual

Details

biocViews	Microarray, OneChannel, QualityControl
Depends	Biobase, affy, lattice
Imports	affy, affyPLM, Biobase, genefilter, graphics, grDevices, lattice, RColorBrewer, simpleaffy, stats, utils, xtable
Suggests	tkWidgets, affydata
System Requirements
License	LGPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me	BiocCaseStudies
Version	1.29.1

Package Downloads

Package Source	affyQCReport_1.29.1.tar.gz
Windows Binary	affyQCReport_1.29.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	affyQCReport_1.29.1.tgz
Package Downloads Report	Download Stats