adSplit

Annotation-Driven Clustering

Bioconductor version: Development (2.8)

This package implements clustering of microarray gene expression profiles according to functional annotations. For each term genes are annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.

Author: Claudio Lottaz, Joern Toedling

Maintainer: Claudio Lottaz

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("adSplit")    

Documentation

PDF R Script Annotation-Driven Clustering
PDF bcb_logo.pdf
PDF minerva_bcb.pdf
PDF Rplots.pdf

Reference Manual

Details

biocViews Microarray, Bioinformatics, Clustering
Depends R, methods
Imports AnnotationDbi, Biobase, cluster, GO.db, graphics, grDevices, KEGG.db, methods, multtest, stats
Suggests golubEsets, vsn, hu6800.db
System Requirements
License GPL (>= 2)
URL http://compdiag.molgen.mpg.de/software/index.shtml
Depends On Me
Imports Me
Suggests Me
Version 1.21.0

Package Downloads

Package Source adSplit_1.21.0.tar.gz
Windows Binary adSplit_1.21.0.zip (32-bit only)
MacOS 10.5 (Leopard) binary adSplit_1.21.0.tgz
Package Downloads Report Download Stats

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