TurboNorm

A fast scatterplot smoother suitable for microarray normalization

Bioconductor version: Development (2.8)

A fast scatterplot smoother based on B-splines with second-order difference penalty. Functions for microarray normalization of single-colour data i.e. Affymetrix/Illumina and two-colour data supplied as marray MarrayRaw-objects or limma RGList-objects are available.

Author: Maarten van Iterson and Chantal van Leeuwen

Maintainer: Maarten van Iterson

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("TurboNorm")    

Documentation

PDF

R Script

TurboNorm Overview

Reference Manual

Details

biocViews	Microarray, OneChannel, TwoChannel, Preprocessing, DNAMethylation, CpGIsland
Depends	R, convert, limma, marray
Imports	stats, grDevices, affy, lattice
Suggests	affydata, affy, lattice
System Requirements
License	LGPL
URL	http://www.humgen.nl/MicroarrayAnalysisGroup.html
Depends On Me
Imports Me
Suggests Me
Version	0.99.0

Package Downloads

Package Source	TurboNorm_0.99.0.tar.gz
Windows Binary	TurboNorm_0.99.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	TurboNorm_0.99.0.tgz
Package Downloads Report	Download Stats