TEQC

Quality control for target capture experiments

Bioconductor version: Development (2.8)

Target capture experiments combine hybridization-based (in solution or on microarrays) capture and enrichment of genomic regions of interest (e.g. the exome) with high throughput sequencing of the captured DNA fragments. This package provides functionalities for assessing and visualizing the quality of the target enrichment process, like specificity and sensitivity of the capture, per-target read coverage and so on.

Author: M. Hummel, S. Bonnin, E. Lowy, G. Roma

Maintainer: Manuela Hummel

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("TEQC")    

Documentation

PDF

R Script

TEQC

Reference Manual

Details

biocViews	QualityControl, Microarray, HighThroughputSequencing, Bioinformatics, Genetics
Depends	IRanges
Imports	Biobase, IRanges
Suggests
System Requirements
License	GPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version	0.99.3

Package Downloads

Package Source	TEQC_0.99.3.tar.gz
Windows Binary	TEQC_0.99.3.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	TEQC_0.99.3.tgz
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