Rsamtools

Import aligned BAM file format sequences into R / Bioconductor

Bioconductor version: Development (2.8)

This package provides an interface to the 'samtools' utilities (see 'LICENCE') for manipulating SAM (Sequence Alignment / Map) format files. Facilities currently available include flexible file input.

Author: Martin Morgan, Herv\'e Pag\`es

Maintainer: Biocore Team c/o BioC user list

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("Rsamtools")    

Documentation

PDF	R Script	An introduction to Rsamtools
PDF	R Script	Using samtools C libraries

Reference Manual

Details

biocViews	DataImport, Sequencing, HighThroughputSequencing
Depends	methods, IRanges, GenomicRanges, Biostrings
Imports	methods, utils, IRanges, GenomicRanges, Biostrings
Suggests	ShortRead, GenomicFeatures, RUnit, KEGG.db
System Requirements
License	Artistic-2.0 + file LICENSE
URL	http://bioconductor.org/packages/release/bioc/html/Rsamtools.html
Depends On Me	ShortRead, girafe
Imports Me	R453Plus1Toolbox, ShortRead
Suggests Me	GenomicRanges, R453Plus1Toolbox
Version	1.3.32

Package Downloads

Package Source	Rsamtools_1.3.32.tar.gz
Windows Binary	Rsamtools_1.3.31.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	Rsamtools_1.3.31.tgz
Package Downloads Report	Download Stats