RpsiXML

R interface to PSI-MI 2.5 files

Bioconductor version: Development (2.8)

Queries, data structure and interface to visualization of interaction datasets. This package inplements the PSI-MI 2.5 standard and supports up to now 8 databases. Further databases supporting PSI-MI 2.5 standard will be added continuously.

Author: Jitao David Zhang, Stefan Wiemann, Marc Carlson, with contributions from Tony Chiang

Maintainer: Jitao David Zhang

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("RpsiXML")    

Documentation

PDF R Script Application Examples of RpsiXML package
PDF R Script Reading PSI-25 XML files

Reference Manual

Details

biocViews Infrastructure, Proteomics
Depends methods, annotate, graph, Biobase, RBGL, XML, hypergraph, AnnotationDbi
Imports
Suggests org.Hs.eg.db, org.Mm.eg.db, org.Dm.eg.db, org.Rn.eg.db, org.Sc.sgd.db, hom.Hs.inp.db, hom.Mm.inp.db, hom.Dm.inp.db, hom.Rn.inp.db, hom.Sc.inp.db, Rgraphviz, ppiStats
System Requirements
License LGPL-3
URL http://www.bioconductor.org
Depends On Me ScISI
Imports Me ScISI
Suggests Me
Version 1.11.0

Package Downloads

Package Source RpsiXML_1.11.0.tar.gz
Windows Binary RpsiXML_1.11.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary RpsiXML_1.11.0.tgz
Package Downloads Report Download Stats

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