RNAither

Statistical analysis of high-throughput RNAi screens

Bioconductor version: Development (2.8)

RNAither analyzes cell-based RNAi screens, and includes quality assessment, customizable normalization and statistical tests, leading to lists of significant genes and biological processes.

Author: Nora Rieber and Lars Kaderali, University of Heidelberg, Viroquant Research Group Modeling, Im Neuenheimer Feld 267, 69120 Heidelberg, Germany

Maintainer: Nora Rieber

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("RNAither")    

Documentation

PDF

R Script

RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screens

Reference Manual

Details

biocViews	CellBasedAssays, QualityControl, Preprocessing, Visualization, Bioinformatics, Annotation, GO
Depends	R, topGO, RankProd, prada
Imports	geneplotter, limma, biomaRt, car, splots, methods
Suggests
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version	1.99.0

Package Downloads

Package Source	RNAither_1.99.0.tar.gz
Windows Binary	RNAither_1.99.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	RNAither_1.99.0.tgz
Package Downloads Report	Download Stats