GSEABase

Gene set enrichment data structures and methods

Bioconductor version: Development (2.8)

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

Author: Martin Morgan, Seth Falcon, Robert Gentleman

Maintainer: Biocore Team c/o BioC user list

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("GSEABase")    

Documentation

PDF R Script An introduction to GSEABase

Reference Manual

Details

biocViews Infrastructure, Bioinformatics
Depends R, Biobase, annotate, methods, graph
Imports annotate, AnnotationDbi, Biobase, graph, methods, XML
Suggests hgu95av2.db, GO.db, org.Hs.eg.db
System Requirements
License Artistic-2.0
URL
Depends On Me BicARE, HTSanalyzeR, PROMISE
Imports Me Category, GGtools, GSRI, HTSanalyzeR, PCpheno, PROMISE, cellHTS2, phenoTest
Suggests Me BiocCaseStudies, GGtools, GSEAlm, GlobalAncova, PGSEA, gage, globaltest, phenoTest
Version 1.13.3

Package Downloads

Package Source GSEABase_1.13.3.tar.gz
Windows Binary GSEABase_1.13.3.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary GSEABase_1.13.3.tgz
Package Downloads Report Download Stats

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