GSEABase

Gene set enrichment data structures and methods

Bioconductor version: Development (2.8)

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

Author: Martin Morgan, Seth Falcon, Robert Gentleman

Maintainer: Biocore Team c/o BioC user list

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("GSEABase")    

Documentation

PDF

R Script

An introduction to GSEABase

Reference Manual

Details

biocViews	Infrastructure, Bioinformatics
Depends	R, Biobase, annotate, methods, graph
Imports	annotate, AnnotationDbi, Biobase, graph, methods, XML
Suggests	hgu95av2.db, GO.db, org.Hs.eg.db
System Requirements
License	Artistic-2.0
URL
Depends On Me	BicARE, HTSanalyzeR, PROMISE
Imports Me	Category, GGtools, GSRI, HTSanalyzeR, PCpheno, PROMISE, cellHTS2, phenoTest
Suggests Me	BiocCaseStudies, GGtools, GSEAlm, GlobalAncova, PGSEA, gage, globaltest, phenoTest
Version	1.13.3

Package Downloads

Package Source	GSEABase_1.13.3.tar.gz
Windows Binary	GSEABase_1.13.3.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	GSEABase_1.13.3.tgz
Package Downloads Report	Download Stats