ChIPsim

Simulation of ChIP-seq experiments

Bioconductor version: Development (2.8)

A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.

Author: Peter Humburg

Maintainer: Peter Humburg

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("ChIPsim")    

Documentation

PDF

R Script

Simulating ChIP-seq experiments

Reference Manual

Details

biocViews	Infrastructure, Bioinformatics, ChIPseq
Depends	Biostrings
Imports	IRanges, Biostrings, ShortRead, graphics, methods, stats, utils
Suggests	actuar, zoo
System Requirements
License	GPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version	1.5.0

Package Downloads

Package Source	ChIPsim_1.5.0.tar.gz
Windows Binary	ChIPsim_1.5.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	ChIPsim_1.5.0.tgz
Package Downloads Report	Download Stats