Category

Category Analysis

Bioconductor version: Development (2.8)

A collection of tools for performing category analysis.

Author: R. Gentleman with contributions from S. Falcon and D.Sarkar

Maintainer: Biocore Team c/o BioC user list

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("Category")    

Documentation

PDF R Script Using Categories to Analyze Microarray Data
PDF R Script Using Chromosome Bands as Categories

Reference Manual

Details

biocViews Bioinformatics, Annotation, GO, Pathways
Depends AnnotationDbi, Biobase
Imports graph, methods, Biobase, AnnotationDbi, RBGL, GSEABase, genefilter, annotate, stats, utils
Suggests EBarrays, ALL, Rgraphviz, RColorBrewer, xtable, hgu95av2.db, Matrix, KEGG.db, GO.db, SNPchip, geneplotter, limma, lattice, graph, Biobase, genefilter, methods
System Requirements
License Artistic-2.0
URL
Depends On Me GOstats, PCpheno, eisa
Imports Me GOstats, PCpheno, cellHTS2, clusterProfiler, phenoTest, ppiStats
Suggests Me BiocCaseStudies, GSEAlm, cellHTS, qpgraph
Version 2.17.2

Package Downloads

Package Source Category_2.17.2.tar.gz
Windows Binary Category_2.17.2.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary Category_2.17.2.tgz
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