AnnotationDbi

Annotation Database Interface

Bioconductor version: Development (2.8)

Provides user interface and database connection code for annotation data packages using SQLite data storage.

Author: Herve Pages, Marc Carlson, Seth Falcon, Nianhua Li

Maintainer: Biocore Team c/o BioC user list

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("AnnotationDbi")    

Documentation

PDF R Script AnnotationDbi: How to use the ".db" annotation packages
PDF R Script Creating an annotation package with a new database schema
PDF R Script Creating probe packages
PDF R Script SQLForge: An easy way to create a new annotation package with a standard database schema.

Reference Manual

Details

biocViews Annotation, Infrastructure
Depends R, methods, utils, Biobase
Imports methods, utils, Biobase, DBI, RSQLite
Suggests DBI, RSQLite, hgu95av2.db, GO.db, human.db0, hgu95av2cdf, affy, KEGG.db, XML
System Requirements
License Artistic-2.0
URL
Depends On Me AnnotationFuncs, Category, ChromHeatMap, MLP, PAnnBuilder, PGSEA, Resourcerer, RpsiXML, annotate, attract, eisa, gene2pathway, goProfiles, oneChannelGUI, ontoTools, pathRender, topGO
Imports Me BioNet, Category, ChromHeatMap, CoCiteStats, ExpressionView, GGBase, GGtools, GOSemSim, GOstats, GSEABase, GlobalAncova, HTSanalyzeR, PAnnBuilder, PCpheno, PatientGeneSets, SLGI, ScISI, adSplit, affycoretools, annaffy, annotate, attract, clusterProfiler, domainsignatures, genefilter, geneplotter, globaltest, goseq, keggorthology, lumi, methylumi, phenoTest, qpgraph, safe, tigre, topGO
Suggests Me BiocCaseStudies, ExpressionView, GeneAnswers, GeneRegionScan, sigPathway
Version 1.13.19

Package Downloads

Package Source AnnotationDbi_1.13.19.tar.gz
Windows Binary AnnotationDbi_1.13.18.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary AnnotationDbi_1.13.18.tgz
Package Downloads Report Download Stats

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